PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_7232_f_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family AP2
Protein Properties Length: 500aa    MW: 55916.5 Da    PI: 6.5794
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_7232_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-16159208155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Neem_7232_f_2 159 SQYRGVTFYRRTGRWESHIWD------SgKQVYLGGFDTAHAAARAYDRAAIKFRG 208
                    78*******************......44************************997 PP

2AP236.31.4e-11251294148
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                    s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++
  Neem_7232_f_2 251 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDSEIEAARAYDR 294
                    89********.7******5553..2.26**********99******97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.71E-16159217IPR016177DNA-binding domain
PfamPF008471.6E-9159208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17160216IPR001471AP2/ERF domain
PROSITE profilePS5103218.031160216IPR001471AP2/ERF domain
SMARTSM003805.4E-31160222IPR001471AP2/ERF domain
CDDcd000186.98E-11160215No hitNo description
CDDcd000187.81E-23251311No hitNo description
SuperFamilySSF541716.28E-16251311IPR016177DNA-binding domain
PfamPF008471.2E-7251294IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-14252309IPR001471AP2/ERF domain
PROSITE profilePS5103214.658252309IPR001471AP2/ERF domain
SMARTSM003805.5E-29252315IPR001471AP2/ERF domain
PRINTSPR003678.9E-5253264IPR001471AP2/ERF domain
PRINTSPR003678.9E-5291311IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MWDLNDSPDQ QRDMEESEGC SSQKTSIDCD DEKGKQVGSV SNSSSSAVVI ENGSDEEVGG  60
ERGLSLEKPC NSRRIFGVSL SHGDAMEEMA LPVPRQFFPV DQEQELETGA TPSGATVGFP  120
RANWVGVKFC QSEPSGAGKS VEVPQPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDS  180
GKQVYLGGFD TAHAAARAYD RAAIKFRGVE ADINFSLEDY EDDLKQMSNL TKEEFVHVLR  240
RQSTGFPRGS SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDSEIEAAR AYDRPAVKCN  300
GKDAVTNFDP SLYEDELNAS GNPASDHNLD LSLGSSASNQ SSLDLLNRRA NAGTDTPSAS  360
FAFEADWRTS GFRPKQETHR SETETQQLLS QIHLQSPGSL KFSEMQRYEQ YRRPEENHML  420
QMLPPHYNSS NYQAQFPSSS KRDRIGNDLS PSTNDIQQWQ SGPHQVFATA AASSGFPPQF  480
RPSHQNWLQK NGFHSLMRPS
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU8836654e-60EU883665.1 Poncirus trifoliata transcription factor APETALA2 (AP2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010652782.10.0PREDICTED: transcription factor APETALA2 isoform X1
SwissprotP479271e-130AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLB5B0E00.0B5B0E0_PONTR; Transcription factor APETALA2
STRINGVIT_07s0031g00220.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22972875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.21e-120AP2 family protein